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Reviewing the relevant scientific and technical literature, this work summarizes the current state-of-the-art knowledge related to gene flow and introgression (the permanent incorporation of genetic information from one set of differentiated populations into another) between genetically modified crops and their wild relatives. They analyze the biological framework for protecting the genetic integrity of indigenous wild relatives of crops in centers of crop origin and diversity, focusing on the issues of emission, dispersal, and deposition of pollen and/or seed; the likelihood and extent of gene flow from crops to wild relatives; and stabilization and the spread of traits in wild species. The material is organized into crop chapters, each of which covers general biological information of the crop; the most important crop wild relatives together with information about their ploidy levels, diverse genomes, centers of origin, and geographic distribution; the crop's potential for hybridization with its wild relatives; pollen flow studies related to pollen dispersal distances and hybridization rates; the current state of the genetic modification technology regarding that crop; and research gaps. The crop chapters discuss banana and plantain; barley; canola and oilseed rape; cassava, manioc, and yucca; chickpea; common bean; cotton; cowpea; finger millet; maize and corn; oat; peanut and groundnut; pearl millet; pigeonpea; potato; rice; sorghum; soybean; sweet potato, batata, and camote; and wheat and bread wheat.